Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22808425_22814559_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22808425 - 22814559

Intron Length:

6135

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGCTAC

5'SS Class:

major

3'SS Sequence:

TTTTAATTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATT

Flanking Amino Acid:

LMMCLQDKGTVVRQMMWLMD

Intron Amino Acid Position:

129

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.1

60.6

41.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

88.2

0.86

0.8

85.7

33.4

Minor 5ss

43.2

-0.7

3.2

58.6

46.3

Minor BPS

84.9

1.17

0.8

94.97

24.6

Associated Gene:

Gene:

LPGAT1

Ensembl Gene ID:

ENSAPLG00000010836

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047457

22782120 - 22844564

62445

ENSAPLT00000011281

22782120 - 22870750

88631