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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22817929_22825308_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22817929 - 22825308
Intron Length:
7380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAATTTTAACA
Flanking Amino Acid:
TPAGRDAVIKESKSKGLQWV
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.3
34.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
81.3
0.7
0.7
74.6
35.2
Minor 5ss
36.2
-1.6
3.4
51.2
45.7
Minor BPS
71.8
0.68
1.2
76.49
34.2

Associated Gene:

Gene:
LPGAT1
Ensembl Gene ID:
ENSAPLG00000010836
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047457
22782120 - 22844564
62445
ENSAPLT00000011281
22782120 - 22870750
88631