Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22825436_22838691_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22825436 - 22838691

Intron Length:

13256

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTGGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTGAA

U12 Branch Point Sequence:

AGAGAATGAACT

Flanking Amino Acid:

RQPTVTHVHYRIFPIKDVPA

Intron Amino Acid Position:

294

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

80.7

33.7

Major BPS

59.7

0.24

1.2

52.7

43.2

Major PPT

81.9

0.72

0.9

81.1

30.9

Minor 5ss

33.7

-1.9

3.3

47.7

Minor BPS

44.3

-0.3

1.9

59.92

42.3

Associated Gene:

Gene:

LPGAT1

Ensembl Gene ID:

ENSAPLG00000010836

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047457

22782120 - 22844564

62445

ENSAPLT00000011281

22782120 - 22870750

88631