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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22873515_22874207_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22873515 - 22874207
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCACGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTTGTTAAAT
Flanking Amino Acid:
ASLIARCTRERHYLEESFVL
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.9
75.5
37
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
20.7
-3.4
3.9
31.8
42.5
Minor BPS
59.7
0.38
2.1
81.62
39.7

Associated Gene:

Gene:
NEK2
Ensembl Gene ID:
ENSAPLG00000010876
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011362
22872113 - 22880389
8277