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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22874446_22875153_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22874446 - 22875153
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ATGTCTCTAATA
Flanking Amino Acid:
FVGTPYYMSPEQINHMSYNE
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.9
36.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
82.7
0.73
0.7
81.3
23.7
Minor 5ss
33.6
-1.9
3.5
49.7
46.1
Minor BPS
61.1
0.35
1.6
70.15
36.5

Associated Gene:

Gene:
NEK2
Ensembl Gene ID:
ENSAPLG00000010876
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011362
22872113 - 22880389
8277