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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22875237_22875467_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22875237 - 22875467
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
AACTCTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
ACTTCAATAAAA
Flanking Amino Acid:
GCLLYELCALSPPFRAYNQK
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.3
79.8
35.3
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
73.2
0.52
0.8
70.5
35.3
Minor 5ss
40.8
-1
2.8
52
39.1
Minor BPS
49.6
-0
2
65.69
39.9

Associated Gene:

Gene:
NEK2
Ensembl Gene ID:
ENSAPLG00000010876
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011362
22872113 - 22880389
8277