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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22875595_22876238_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22875595 - 22876238
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CTGTTGGTAATT
Flanking Amino Acid:
ELLKEMLNLKDYCRPSVEDI
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83.3
0.75
0.6
82
22.8
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
44.8
-0.3
2.5
66.18
45.6

Associated Gene:

Gene:
NEK2
Ensembl Gene ID:
ENSAPLG00000010876
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011362
22872113 - 22880389
8277