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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22877474_22877562_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22877474 - 22877562
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCTACT
5'SS Class:
major
3'SS Sequence:
TTTTTCAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAAAA
Flanking Amino Acid:
RERLAEDKLARAENLMRNYN
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77.1
37.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
75.1
0.56
1
71.7
37.2
Minor 5ss
50.1
0.01
2.2
70
40.2
Minor BPS
63.5
0.42
1.6
76.4
34.4

Associated Gene:

Gene:
NEK2
Ensembl Gene ID:
ENSAPLG00000010876
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011362
22872113 - 22880389
8277