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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2294007_2300872_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2294007 - 2300872
Intron Length:
6866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTGATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATATTATCT
Flanking Amino Acid:
KDEHYEFEIKITVLDETWTV
Intron Amino Acid Position:
1212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.8
0.56
1
69.3
40.7
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
57.8
0.32
1.9
81.7
39.5

Associated Gene:

Gene:
KIF16B
Ensembl Gene ID:
ENSAPLG00000012639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013213
2253568 - 2394027
140460
ENSAPLT00000030926
2254285 - 2394027
139743
ENSAPLT00000026847
2254285 - 2394027
139743
ENSAPLT00000041001
2292319 - 2394027
101709
ENSAPLT00000022300
2268680 - 2394027
125348
ENSAPLT00000040072
2253568 - 2394027
140460
ENSAPLT00000020499
2254285 - 2394027
139743
ENSAPLT00000031256
2254285 - 2394027
139743