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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22941324_22949194_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22941324 - 22949194
Intron Length:
7871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TGCCTGCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
RLPTQELLQKFVPSEDTQGA
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
66.1
0.4
1.3
57.1
49.4
Major PPT
67.5
0.39
0.9
57.7
38.6
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
RD3
Ensembl Gene ID:
ENSAPLG00000020251
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026806
22941200 - 22957724
16525