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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22972894_22973545_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22972894 - 22973545
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TACTCTGTATTT
Flanking Amino Acid:
LDKNSRLEEQISDLYKSLES
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
81.8
38.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
84.9
0.79
0.7
80.8
31.2
Minor 5ss
45.7
-0.5
2.9
67.7
43.2
Minor BPS
47.7
-0
2.2
68.17
43.6

Associated Gene:

Gene:
TRAF5
Ensembl Gene ID:
ENSAPLG00000006555
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006848
22970255 - 22980022
9768