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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22973989_22974361_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22973989 - 22974361
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGGTA
5'SS Class:
major
3'SS Sequence:
TTATTATGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATTA
Flanking Amino Acid:
NCSQIILKKEIEKHHTVCPE
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
66.1
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.4
0.64
1
73.9
40.4
Minor 5ss
31.8
-2.1
3.8
46.8
48.5
Minor BPS
59.1
0.28
1.6
71.05
35.7

Associated Gene:

Gene:
TRAF5
Ensembl Gene ID:
ENSAPLG00000006555
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006848
22970255 - 22980022
9768