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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22974440_22974754_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22974440 - 22974754
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
AAAATGCAAACT
Flanking Amino Acid:
NKYVMLINIKNHEKDDCPDY
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
82.8
0.74
0.7
77.2
31.6
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
37.6
-0.8
2.3
53.61
41.2

Associated Gene:

Gene:
TRAF5
Ensembl Gene ID:
ENSAPLG00000006555
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006848
22970255 - 22980022
9768