Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22974920_22975746_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22974920 - 22975746

Intron Length:

827

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TTATGTGTCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TGGGCTTTAATT

Flanking Amino Acid:

NSKIILGRYQEHLQQCLFES

Intron Amino Acid Position:

126

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.7

83.9

30.3

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

70.2

0.45

64.9

41.1

Minor 5ss

38.4

-1.3

2.9

48.7

47.5

Minor BPS

67.4

0.62

1.4

41.5

Associated Gene:

Gene:

TRAF5

Ensembl Gene ID:

ENSAPLG00000006555

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006848

22970255 - 22980022

9768