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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22975849_22977310_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22975849 - 22977310
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
AACTCCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ACTGGTTTAACT
Flanking Amino Acid:
VDKETIKMHEVFRDNCCKRE
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
76.4
0.59
0.9
68.9
36.2
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
57.5
0.32
1.9
73.4
44.1

Associated Gene:

Gene:
TRAF5
Ensembl Gene ID:
ENSAPLG00000006555
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006848
22970255 - 22980022
9768