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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22977369_22979124_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22977369 - 22979124
Intron Length:
1756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTTAGTACA
5'SS Class:
major
3'SS Sequence:
TCTTGTAATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTCTTGTAATC
Flanking Amino Acid:
RFCQQCILTLRELNAVPTCP
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
73.1
37.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
71
0.47
1
63.4
42
Minor 5ss
32.9
-2
2.4
37.7
39.2
Minor BPS
54.3
0.12
2
70.66
35.2

Associated Gene:

Gene:
TRAF5
Ensembl Gene ID:
ENSAPLG00000006555
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006848
22970255 - 22980022
9768