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Intron Name: Anas_platyrhynchos_platyrhynchos_3_22979345_22979877_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

22979345 - 22979877

Intron Length:

533

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTGTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

TTTAACAGGATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

77.5

31.3

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

88.1

0.86

0.8

84.7

30.1

Minor 5ss

39.9

-1.1

3.2

57.4

46.8

Minor BPS

-0.2

1.9

71.03

39.5

Associated Gene:

Gene:

TRAF5

Ensembl Gene ID:

ENSAPLG00000006555

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006848

22970255 - 22980022

9768