Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22996485_23002484_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22996485 - 23002484

Intron Length:

6000

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTTCA

5'SS Class:

strong_major

3'SS Sequence:

GTCCTTTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

TGTTCATGCAAT

Flanking Amino Acid:

TTEEQLLAVQGTKHSDHSVF

Intron Amino Acid Position:

273

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

79.4

29.7

Major BPS

84.8

0.86

85.7

34.9

Major PPT

76.8

0.6

0.9

72.1

37.9

Minor 5ss

46.6

-0.4

2.4

59.3

45.3

Minor BPS

46.5

-0.2

2.2

72.71

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007210

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007511

22996222 - 23013427

17206