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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23010102_23011859_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23010102 - 23011859
Intron Length:
1758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAC
U12 Branch Point Sequence:
TTCTCTTCAAAG
Flanking Amino Acid:
KEKHGYNVEQALGMLFWHKH
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
69.9
0.49
0.9
61.1
36.4
Major PPT
76.5
0.6
1
78.2
27.9
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
58.1
0.12
1.7
64.71
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007210
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007511
22996222 - 23013427
17206