About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23011913_23013384_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23011913 - 23013384
Intron Length:
1472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TGCTTTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ATAACTTTGACA
Flanking Amino Acid:
SPYHSIPDAKLDEYIAIAKE
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
68.3
42.6
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
81.3
0.7
0.9
75.5
38.4
Minor 5ss
38.8
-1.3
3
52.6
43.7
Minor BPS
65.9
0.49
1.2
70.15
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007210
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007511
22996222 - 23013427
17206