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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23065460_23072260_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23065460 - 23072260
Intron Length:
6801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCTCTTGAAAT
Flanking Amino Acid:
NVHKHSRLAEVLQLGSEILP
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.1
0.61
0.9
69.9
35.3
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
66.6
0.6
1.5
82.05
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007453
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033737
23043555 - 23212100
168546
ENSAPLT00000007756
23040750 - 23212100
171351
ENSAPLT00000040252
23032499 - 23212220
179722