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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2307233_2308280_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2307233 - 2308280
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ACATTTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACATTTTTAACA
Flanking Amino Acid:
GTVQRKLKYEKSQQWQPHYD
Intron Amino Acid Position:
1171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.9
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74
0.54
1
69.7
39.7
Minor 5ss
34.5
-1.8
3.3
49
47.2
Minor BPS
69.7
0.62
1.2
69.76
36.7

Associated Gene:

Gene:
KIF16B
Ensembl Gene ID:
ENSAPLG00000012639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023573
2304660 - 2394027
89368