About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23072654_23085284_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23072654 - 23085284
Intron Length:
12631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTGCTTTATCC
Flanking Amino Acid:
VINAFENVDEGISSLFSSLK
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.2
87.1
30
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
82.1
0.72
0.8
74.4
36.3
Minor 5ss
34.7
-1.7
2.7
42.8
44
Minor BPS
60.7
0.31
1.7
70.66
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007453
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040252
23032499 - 23212220
179722
ENSAPLT00000033737
23043555 - 23212100
168546
ENSAPLT00000007756
23040750 - 23212100
171351