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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23122288_23125927_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23122288 - 23125927
Intron Length:
3640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GATTGCCCAATT
Flanking Amino Acid:
SMSRGIDTEKVLQICPKDMR
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
88
0.85
0.7
85.4
28.4
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
45.9
-0.2
2.2
67.28
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007453
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040252
23032499 - 23212220
179722
ENSAPLT00000033737
23043555 - 23212100
168546
ENSAPLT00000007756
23040750 - 23212100
171351