Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23142423_23211251_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23142423 - 23211251

Intron Length:

68829

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCCCTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTAAT

U12 Branch Point Sequence:

CAGTTAATGACT

Flanking Amino Acid:

LILTYNLRKRIVFRKISDVK

Intron Amino Acid Position:

618

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

72.4

39.5

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

79.7

0.67

0.7

74.5

23.7

Minor 5ss

31.6

-2.1

3.1

31.8

42.6

Minor BPS

45.9

-0.2

1.9

61.46

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007453

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040252

23032499 - 23212220

179722

ENSAPLT00000033737

23043555 - 23212100

168546

ENSAPLT00000007756

23040750 - 23212100

171351