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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2318360_2318681_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2318360 - 2318681
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGAAA
5'SS Class:
major
3'SS Sequence:
TTCCTTAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTTCCTTAAAT
Flanking Amino Acid:
LFPVKGPICLRLEFERQQRE
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
68.2
38.4
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
71.3
0.48
1
71.5
37.2
Minor 5ss
29.5
-2.3
3.4
38.5
46.8
Minor BPS
90.6
1.35
1
101.7
23.4

Associated Gene:

Gene:
KIF16B
Ensembl Gene ID:
ENSAPLG00000012639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034829
2254285 - 2394027
139743
ENSAPLT00000030926
2254285 - 2394027
139743
ENSAPLT00000022300
2268680 - 2394027
125348
ENSAPLT00000020499
2254285 - 2394027
139743
ENSAPLT00000041001
2292319 - 2394027
101709