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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2318360_2326338_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2318360 - 2326338
Intron Length:
7979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTTCCTTAAAT
Flanking Amino Acid:
NLSAVMLYNPGLEFERQQRE
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
71.3
0.48
1
71.5
37.2
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
90.6
1.35
1
101.7
23.4

Associated Gene:

Gene:
KIF16B
Ensembl Gene ID:
ENSAPLG00000012639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026847
2254285 - 2394027
139743
ENSAPLT00000023573
2304660 - 2394027
89368
ENSAPLT00000013213
2253568 - 2394027
140460
ENSAPLT00000040072
2253568 - 2394027
140460
ENSAPLT00000031256
2254285 - 2394027
139743