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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2326701_2331258_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2326701 - 2331258
Intron Length:
4558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACCC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTAAAT
U12 Branch Point Sequence:
TTTTTCTCATCA
Flanking Amino Acid:
QITEATHLNQGAVILLGRTN
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
58
39.3
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
86.1
0.81
0.8
86.6
26.1
Minor 5ss
39.4
-1.2
3
52.5
44.2
Minor BPS
63.8
0.43
1.8
79.26
37.1

Associated Gene:

Gene:
KIF16B
Ensembl Gene ID:
ENSAPLG00000012639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023573
2304660 - 2394027
89368
ENSAPLT00000034829
2254285 - 2394027
139743
ENSAPLT00000022300
2268680 - 2394027
125348
ENSAPLT00000031256
2254285 - 2394027
139743
ENSAPLT00000013213
2253568 - 2394027
140460
ENSAPLT00000030926
2254285 - 2394027
139743
ENSAPLT00000041001
2292319 - 2394027
101709
ENSAPLT00000026847
2254285 - 2394027
139743
ENSAPLT00000040072
2253568 - 2394027
140460