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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23311072_23350317_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23311072 - 23350317
Intron Length:
39246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCACCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
TTATCTGTCACT
Flanking Amino Acid:
FDVGLHHFLVRYIYVPMGGS
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
74.5
0.55
0.9
66.5
34
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
52.3
0.15
2.4
80.24
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029050
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027028
23229372 - 23350376
121005