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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2331397_2332663_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2331397 - 2332663
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGAAT
5'SS Class:
major
3'SS Sequence:
TGTGTGTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGTTACGAGACT
Flanking Amino Acid:
REDAVTEQDIVLHGLDLESE
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
73.1
37.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
68.2
0.41
1.1
65.8
45.3
Minor 5ss
40.2
-1.1
3.2
53.5
45
Minor BPS
45.9
-0.2
2.5
72.88
44

Associated Gene:

Gene:
KIF16B
Ensembl Gene ID:
ENSAPLG00000012639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013213
2253568 - 2394027
140460
ENSAPLT00000030926
2254285 - 2394027
139743
ENSAPLT00000041001
2292319 - 2394027
101709
ENSAPLT00000026847
2254285 - 2394027
139743
ENSAPLT00000040072
2253568 - 2394027
140460
ENSAPLT00000023573
2304660 - 2394027
89368
ENSAPLT00000034829
2254285 - 2394027
139743
ENSAPLT00000022300
2268680 - 2394027
125348
ENSAPLT00000031256
2254285 - 2394027
139743