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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23372355_23379598_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23372355 - 23379598
Intron Length:
7244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CTGTCCTTAAAA
Flanking Amino Acid:
PLEAVSYWALVIWKTCLCQT
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
84.9
0.78
0.9
90.5
22.3
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
74.2
0.76
1.4
76.54
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007807
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008096
23371281 - 23437400
66120