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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23379771_23385706_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23379771 - 23385706
Intron Length:
5936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GTTTCTTCATTT
Flanking Amino Acid:
LMNFDEFSKQMRKQEAFSLK
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.4
0.73
0.8
82.3
28.5
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
56.9
0.3
1.8
76.79
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007807
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008096
23371281 - 23437400
66120
ENSAPLT00000041324
23378486 - 23437400
58915
ENSAPLT00000040097
23378486 - 23394907
16422