About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23385920_23390627_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23385920 - 23390627
Intron Length:
4708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAG
U12 Branch Point Sequence:
TGTACCATTATG
Flanking Amino Acid:
LHIPAVEEAKRKWYDNENEY
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
60.7
0.27
1.6
59.7
46.7
Major PPT
81.7
0.71
0.8
75.8
32.8
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
47.7
-0.3
2
58.32
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007807
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041324
23378486 - 23437400
58915
ENSAPLT00000040097
23378486 - 23394907
16422
ENSAPLT00000008096
23371281 - 23437400
66120