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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23391110_23393538_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23391110 - 23393538
Intron Length:
2429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACCAAT
U12 Branch Point Sequence:
CATTTACCAATT
Flanking Amino Acid:
QGTLFWGLKKDPLDFEWSYW
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
64.1
0.35
1.2
71
33.2
Major PPT
69
0.43
1
60.8
44.7
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
44.1
-0.3
2
63.03
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007807
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041324
23378486 - 23437400
58915
ENSAPLT00000040097
23378486 - 23394907
16422
ENSAPLT00000008096
23371281 - 23437400
66120