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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23393607_23394786_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23393607 - 23394786
Intron Length:
1180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TTATTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATGTCATTAATG
Flanking Amino Acid:
SFYEVHRVSHKYEGDIDRNF
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.2
0.79
0.7
81.6
30.1
Minor 5ss
41
-1
3
59.3
39
Minor BPS
64.5
0.32
1.7
67.02
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007807
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040097
23378486 - 23394907
16422