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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23442632_23445734_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23442632 - 23445734
Intron Length:
3103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTGCATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ACTTCTGTATCT
Flanking Amino Acid:
HPPLGSCAHKTISVFEERAH
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
83.3
29.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
84.6
0.78
0.8
81.6
35
Minor 5ss
63.8
0.47
2.2
75.6
33.8
Minor BPS
49.9
0.07
2.2
73.56
43.9

Associated Gene:

Gene:
SERTAD4
Ensembl Gene ID:
ENSAPLG00000020952
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032836
23441891 - 23446406
4516