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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23468653_23469775_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23468653 - 23469775
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATATTCCAAACT
Flanking Amino Acid:
LIGGQVYIIRDTYVKLTLLN
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.6
0.76
0.8
82
34.8
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
53
0.17
2
75.69
40.7

Associated Gene:

Gene:
SYT14
Ensembl Gene ID:
ENSAPLG00000007935
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008236
23468339 - 23534946
66608