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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23468653_23472782_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23468653 - 23472782
Intron Length:
4130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
ATTTATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATATTCCAAACT
Flanking Amino Acid:
FKNLAANRPPNTYVKLTLLN
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
67.8
32.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.6
0.76
0.8
82
34.8
Minor 5ss
28.7
-2.4
3.1
36.5
41.7
Minor BPS
53
0.17
2
75.69
40.7

Associated Gene:

Gene:
SYT14
Ensembl Gene ID:
ENSAPLG00000007935
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032910
23468339 - 23534946
66608