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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23469833_23472782_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23469833 - 23472782
Intron Length:
2950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
CCCCTGTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
ATTTCTTTTACT
Flanking Amino Acid:
FKNLAANRPPNGLFCCLKHL
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
67.8
32.7
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
68.6
0.42
1
67.5
37.8
Minor 5ss
28.7
-2.4
3.1
36.5
41.7
Minor BPS
75.8
0.89
1.5
90.35
33.1

Associated Gene:

Gene:
SYT14
Ensembl Gene ID:
ENSAPLG00000007935
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008236
23468339 - 23534946
66608