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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23489244_23514345_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23489244 - 23514345
Intron Length:
25102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TCATTATTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTC
Flanking Amino Acid:
GYSSEASIDEANCIQRMRRT
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
79.2
0.66
0.9
77.2
35.7
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
65.1
0.45
1.8
79.59
35.6

Associated Gene:

Gene:
SYT14
Ensembl Gene ID:
ENSAPLG00000007935
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032910
23468339 - 23534946
66608
ENSAPLT00000008236
23468339 - 23534946
66608