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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23514565_23520823_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23514565 - 23520823
Intron Length:
6259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTATTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTCAAAC
Flanking Amino Acid:
TTRTNSRDKLYNSYMSKDQH
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.4
0.55
1
70.9
38.9
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
56.8
0.19
1.8
73.17
37.3

Associated Gene:

Gene:
SYT14
Ensembl Gene ID:
ENSAPLG00000007935
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008236
23468339 - 23534946
66608