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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23581846_23582266_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23581846 - 23582266
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCTGT
5'SS Class:
major
3'SS Sequence:
TTTCTTAACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GCTTTCTTAACT
Flanking Amino Acid:
AENLTSVIDTRFQFFIDKVL
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
62.7
44.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
74.9
0.56
0.9
75
33.6
Minor 5ss
44.6
-0.6
3.1
65.7
45.4
Minor BPS
82.1
1.08
1.1
88.23
36.9

Associated Gene:

Gene:
UTP25
Ensembl Gene ID:
ENSAPLG00000007948
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008285
23579476 - 23589512
10037