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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23583165_23584408_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23583165 - 23584408
Intron Length:
1244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTTTT
5'SS Class:
major
3'SS Sequence:
TGTCTCTGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAG
U12 Branch Point Sequence:
TCTGCAGTGATG
Flanking Amino Acid:
YLMQNWEHVLHLMKHVNLLP
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
76.8
34.5
Major BPS
55.5
0.14
1.5
65.8
41
Major PPT
73.8
0.54
0.9
69.6
36.7
Minor 5ss
39.8
-1.1
3.2
54.6
44.9
Minor BPS
42.4
-0.7
2.3
50.82
44.2

Associated Gene:

Gene:
UTP25
Ensembl Gene ID:
ENSAPLG00000007948
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008285
23579476 - 23589512
10037