About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23586850_23587550_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23586850 - 23587550
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGATCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTGTTGTAACT
Flanking Amino Acid:
YRDQGLTRPKVLMIVPFREC
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.6
0.55
1
69.5
41.5
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
52.3
0.15
2.1
74.22
43.6

Associated Gene:

Gene:
UTP25
Ensembl Gene ID:
ENSAPLG00000007948
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008285
23579476 - 23589512
10037