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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2364731_2367550_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2364731 - 2367550
Intron Length:
2820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTCGTCTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGCTTCTGATTT
Flanking Amino Acid:
GGNSKTIMIATISPADVNYG
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.9
0.56
0.8
73.6
31.4
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
51.2
0.12
1.7
68.88
42.5

Associated Gene:

Gene:
KIF16B
Ensembl Gene ID:
ENSAPLG00000012639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040072
2253568 - 2394027
140460
ENSAPLT00000023573
2304660 - 2394027
89368
ENSAPLT00000022300
2268680 - 2394027
125348
ENSAPLT00000034829
2254285 - 2394027
139743
ENSAPLT00000020499
2254285 - 2394027
139743
ENSAPLT00000030926
2254285 - 2394027
139743
ENSAPLT00000041001
2292319 - 2394027
101709
ENSAPLT00000013213
2253568 - 2394027
140460
ENSAPLT00000026847
2254285 - 2394027
139743