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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2367683_2367852_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2367683 - 2367852
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
CCCCACATCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATAAATG
Flanking Amino Acid:
VTLGNVISALADLSQDATNP
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.8
76.2
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
64.6
0.33
0.9
56.6
31.7
Minor 5ss
34.6
-1.8
2.9
44.7
43.1
Minor BPS
60.4
0.19
2
72.41
40.7

Associated Gene:

Gene:
KIF16B
Ensembl Gene ID:
ENSAPLG00000012639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023573
2304660 - 2394027
89368
ENSAPLT00000040072
2253568 - 2394027
140460
ENSAPLT00000022300
2268680 - 2394027
125348
ENSAPLT00000034829
2254285 - 2394027
139743
ENSAPLT00000020499
2254285 - 2394027
139743
ENSAPLT00000030926
2254285 - 2394027
139743
ENSAPLT00000013213
2253568 - 2394027
140460
ENSAPLT00000026847
2254285 - 2394027
139743
ENSAPLT00000041001
2292319 - 2394027
101709