Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2380544 - 2393980

Intron Length:

13437

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTACTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTGTTTTTACTT

Flanking Amino Acid:

VAVRVRPMNRREKDLNAKFI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

71.2

34.2

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

91.7

0.94

0.7

89.8

25.4

Minor 5ss

27.1

-2.6

3.2

41.6

Minor BPS

63.3

0.5

1.6

78.42

39.1

Associated Gene:

Gene:

KIF16B

Ensembl Gene ID:

ENSAPLG00000012639

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023573

2304660 - 2394027

89368

ENSAPLT00000034829

2254285 - 2394027

139743

ENSAPLT00000022300

2268680 - 2394027

125348

ENSAPLT00000031256

2254285 - 2394027

139743

ENSAPLT00000020499

2254285 - 2394027

139743

ENSAPLT00000030926

2254285 - 2394027

139743

ENSAPLT00000041001

2292319 - 2394027

101709

ENSAPLT00000013213

2253568 - 2394027

140460

ENSAPLT00000026847

2254285 - 2394027

139743

ENSAPLT00000040072

2253568 - 2394027

140460

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2380544_2393980_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: