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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23849862_23998101_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23849862 - 23998101
Intron Length:
148240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAGG
5'SS Class:
major
3'SS Sequence:
TTCTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAG
U12 Branch Point Sequence:
ATTTCCTCAGTA
Flanking Amino Acid:
AAHLAACWVTGDERSRESPA
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
58.4
0.21
1.5
67.6
40.6
Major PPT
83.9
0.76
0.7
77
31.7
Minor 5ss
32.9
-1.9
2.9
40.9
44.9
Minor BPS
61.4
0.35
1.8
74.36
37.3

Associated Gene:

Gene:
SLC35F3
Ensembl Gene ID:
ENSAPLG00000008027
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043199
23849816 - 24034992
185177