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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23983002_24028571_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23983002 - 24028571
Intron Length:
45570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCGG
5'SS Class:
major
3'SS Sequence:
CTCCTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTGTACTAATG
Flanking Amino Acid:
QPRAHPHQSGRECCRFFGDN
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.2
55.2
49
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.6
0.62
0.8
76.1
32.5
Minor 5ss
35.7
-1.6
3.3
47.7
47.8
Minor BPS
45
-0.5
2
53.49
41.6

Associated Gene:

Gene:
SLC35F3
Ensembl Gene ID:
ENSAPLG00000008027
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033103
23982538 - 24034992
52455