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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_23998427_24028571_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23998427 - 24028571
Intron Length:
30145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTGTACTAATG
Flanking Amino Acid:
AEKQSPKQRYRECCRFFGDN
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.6
0.62
0.8
76.1
32.5
Minor 5ss
34.7
-1.7
3.5
45.4
49.7
Minor BPS
45
-0.5
2
53.49
41.6

Associated Gene:

Gene:
SLC35F3
Ensembl Gene ID:
ENSAPLG00000008027
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047185
23867298 - 24034992
167695
ENSAPLT00000043199
23849816 - 24034992
185177
ENSAPLT00000030464
23982926 - 24034992
52067
ENSAPLT00000008332
23899756 - 24034992
135237